7KII
Muscovy duck circovirus Rep domain complexed with a single-stranded DNA 10-mer comprising the cleavage site and Mn2+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-27 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97910 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 55.417, 66.343, 71.259 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.560 - 1.300 |
R-factor | 0.151 |
Rwork | 0.149 |
R-free | 0.18430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6wdz |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.560 | 1.346 |
High resolution limit [Å] | 1.300 | 1.300 |
Rmerge | 0.053 | 0.368 |
Rmeas | 0.059 | 0.419 |
Rpim | 0.025 | 0.196 |
Number of reflections | 32195 | 3197 |
<I/σ(I)> | 12.24 | 2.18 |
Completeness [%] | 98.4 | 99.35 |
Redundancy | 4.6 | 4.3 |
CC(1/2) | 0.998 | 0.943 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.8 | 298 | 0.1 M sodium acetate, pH 4.8, 20 mM Calcium chloride, 26% 2-methyl-2,4-pentanediol, 30% polyethylene glycol 200 added to drop |