7KG3
Crystal structure of CoV-2 Nsp3 Macrodomain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 112.594, 112.594, 41.407 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.110 - 1.450 |
R-factor | 0.1584 |
Rwork | 0.158 |
R-free | 0.17740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6w02 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.421 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.110 | 1.502 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.098 | 3.211 |
Rmeas | 0.103 | 3.374 |
Rpim | 0.032 | 1.027 |
Number of reflections | 53126 | 5190 |
<I/σ(I)> | 11.53 | 1.35 |
Completeness [%] | 94.1 | 80.03 |
Redundancy | 10.2 | 10.4 |
CC(1/2) | 0.998 | 0.412 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 308 | 70% saturated ammonium sulfate, 0.4% BME, 200 mM Imidazole / Malate pH 7.4, 50 mM MES pH 6.0 |