7KFV
Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B12 Fab)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2020-07-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 84.834, 113.250, 268.878 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 134.440 - 2.102 |
R-factor | 0.1846 |
Rwork | 0.183 |
R-free | 0.21550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7bz5 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | XDS (20200131) |
Data scaling software | XDS (20200131) |
Phasing software | PHASER (2.8.3) |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 200.000 | 2.230 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmeas | 0.257 | |
Number of reflections | 149225 | 44734 |
<I/σ(I)> | 8.98 | 1.35 |
Completeness [%] | 98.9 | 94.7 |
Redundancy | 7.01 | 6.4 |
CC(1/2) | 0.995 | 0.397 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293.15 | protein sample: 13 mg/mL in 150mM NaCl, 25 mM Tris-HCl, pH 7.5 mother liquor composition (equal volume): 0.1 M BICINE pH 8.5, 20% (w/v ) PEG 10000 |