7KEH
Crystal structure from SARS-CoV-2 NendoU NSP15
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9794 |
Spacegroup name | P 63 |
Unit cell lengths | 150.920, 150.920, 111.100 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 84.650 - 2.590 |
R-factor | 0.189 |
Rwork | 0.187 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6x1b |
RMSD bond length | 0.010 |
RMSD bond angle | 1.200 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 84.650 | 84.650 | 2.743 |
High resolution limit [Å] | 2.590 | 7.517 | 2.590 |
Rmerge | 1.031 | 0.495 | 3.288 |
Rmeas | 1.049 | 0.503 | 3.345 |
Rpim | 0.192 | 0.091 | 0.608 |
Number of reflections | 37814 | 1890 | 1889 |
<I/σ(I)> | 7.6 | ||
Completeness [%] | 94.8 | 99.8 | 60.3 |
Redundancy | 29.8 | 30.4 | 30.1 |
CC(1/2) | 0.990 | 0.989 | 0.373 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6.5 | 293 | 20 % w/v Polyethylene glycol 3350, 100 mM BIS-TRIS propane, pH 6.5, 200 mM Sodium sulfate |