7KDW
Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to Compound 6 (HZ01052)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 1 |
Unit cell lengths | 27.220, 37.960, 57.070 |
Unit cell angles | 96.63, 103.82, 90.88 |
Refinement procedure
Resolution | 33.020 - 1.710 |
R-factor | 0.2038 |
Rwork | 0.202 |
R-free | 0.24610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3uv2 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.020 | 33.020 | 1.750 |
High resolution limit [Å] | 1.710 | 7.650 | 1.710 |
Rmerge | 0.214 | 0.114 | 0.411 |
Rmeas | 0.222 | 0.120 | 0.460 |
Total number of observations | 301156 | ||
Number of reflections | 23629 | 261 | 1722 |
<I/σ(I)> | 11.82 | 21.56 | 3.02 |
Completeness [%] | 99.3 | 98.1 | 99.5 |
Redundancy | 12.745 | 13.337 | 5.113 |
CC(1/2) | 0.997 | 0.998 | 0.907 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2M Lithium sulfate monohydrate, 0.1M BIS-TRIS pH6.5, 25 percent polyethylene glycol 3,350 |