7K6S
Crystal structure of the bromodomain (BD) of human Bromodomain and PHD finger-containing Transcription Factor (BPTF) bound to Compound 4 (SKT1174)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-30 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.00 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 111.210, 27.210, 37.920 |
Unit cell angles | 90.00, 96.83, 90.00 |
Refinement procedure
Resolution | 32.990 - 1.230 |
R-factor | 0.166 |
Rwork | 0.165 |
R-free | 0.20290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3uv2 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.990 | 32.990 | 1.260 |
High resolution limit [Å] | 1.230 | 5.500 | 1.230 |
Rmerge | 0.035 | 0.034 | 0.158 |
Rmeas | 0.041 | 0.041 | 0.192 |
Total number of observations | 117307 | ||
Number of reflections | 32926 | 390 | 2387 |
<I/σ(I)> | 22.91 | 39.31 | 6.48 |
Completeness [%] | 99.3 | 95.6 | 98.7 |
Redundancy | 3.563 | 3.341 | 3.023 |
CC(1/2) | 0.999 | 0.997 | 0.973 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M Lithium sulfate monohydrate, 0.1 M BIS-TRIS, 25 percent Polyethylene glycol 3,350 |