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7K6C

Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium abscessus ATCC 19977 / DSM 44196 with NADP and inhibitor P218

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2020-08-06
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 1 21 1
Unit cell lengths75.630, 62.490, 124.550
Unit cell angles90.00, 94.67, 90.00
Refinement procedure
Resolution37.690 - 2.000
R-factor0.1666
Rwork0.166
R-free0.20720
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2w3v as per MORDA
RMSD bond length0.007
RMSD bond angle0.931
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX (1.18.2)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]37.69037.6902.050
High resolution limit [Å]2.0008.9402.000
Rmerge0.0720.0230.545
Rmeas0.0840.0270.653
Total number of observations292968
Number of reflections784079175718
<I/σ(I)>13.8743.72.24
Completeness [%]99.797.199.3
Redundancy3.7373.453.283
CC(1/2)0.9980.9990.760
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5287Optimization screen based on Microlytics MCSG1 B6: 200mM CaOAc2, 20% (w/V) PEG 8000, 100mM MES / NaOH pH 6.5: MyabA.01062.a.B15.PS38597 at 12.39mg/ml + 3.5mM NADP + 3mM P218: tray 317391 F7: cryo 20% EG + compounds: puck kdu7-5

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