7K6C
Crystal Structure of Dihydrofolate reductase (DHFR) from Mycobacterium abscessus ATCC 19977 / DSM 44196 with NADP and inhibitor P218
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-08-06 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.97872 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 75.630, 62.490, 124.550 |
Unit cell angles | 90.00, 94.67, 90.00 |
Refinement procedure
Resolution | 37.690 - 2.000 |
R-factor | 0.1666 |
Rwork | 0.166 |
R-free | 0.20720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2w3v as per MORDA |
RMSD bond length | 0.007 |
RMSD bond angle | 0.931 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX (1.18.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.690 | 37.690 | 2.050 |
High resolution limit [Å] | 2.000 | 8.940 | 2.000 |
Rmerge | 0.072 | 0.023 | 0.545 |
Rmeas | 0.084 | 0.027 | 0.653 |
Total number of observations | 292968 | ||
Number of reflections | 78407 | 917 | 5718 |
<I/σ(I)> | 13.87 | 43.7 | 2.24 |
Completeness [%] | 99.7 | 97.1 | 99.3 |
Redundancy | 3.737 | 3.45 | 3.283 |
CC(1/2) | 0.998 | 0.999 | 0.760 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 287 | Optimization screen based on Microlytics MCSG1 B6: 200mM CaOAc2, 20% (w/V) PEG 8000, 100mM MES / NaOH pH 6.5: MyabA.01062.a.B15.PS38597 at 12.39mg/ml + 3.5mM NADP + 3mM P218: tray 317391 F7: cryo 20% EG + compounds: puck kdu7-5 |