7JZ4
Crystal structure of broadly Plasmodium RIFIN reactive LAIR1-inserted antibody MGD21
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-20 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 80.932, 81.099, 111.561 |
Unit cell angles | 90.00, 94.03, 90.00 |
Refinement procedure
Resolution | 38.933 - 2.747 |
R-factor | 0.1966 |
Rwork | 0.194 |
R-free | 0.24930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3kgr |
RMSD bond length | 0.006 |
RMSD bond angle | 0.921 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.800 |
High resolution limit [Å] | 2.747 | 7.460 | 2.747 |
Rmerge | 0.103 | 0.045 | 0.872 |
Rmeas | 0.120 | 0.054 | 1.015 |
Rpim | 0.061 | 0.028 | 0.517 |
Number of reflections | 37579 | 1942 | 1893 |
<I/σ(I)> | 10.3 | ||
Completeness [%] | 99.9 | 99.3 | 99.5 |
Redundancy | 3.8 | 3.6 | 3.8 |
CC(1/2) | 0.996 | 0.641 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.1 M MgCl2, 0.1 M Tris HCl pH 8.5, 20% PEG 3350, 25% PEG 400 |