7JQ3
Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU R-AXIS IV |
Temperature [K] | 120 |
Detector technology | IMAGE PLATE |
Collection date | 2020-07-03 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 45.240, 53.760, 113.822 |
Unit cell angles | 90.00, 101.13, 90.00 |
Refinement procedure
Resolution | 48.440 - 2.100 |
R-factor | 0.2094 |
Rwork | 0.207 |
R-free | 0.25440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y2e |
RMSD bond length | 0.009 |
RMSD bond angle | 1.177 |
Data reduction software | iMOSFLM |
Data scaling software | pointless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.440 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Number of reflections | 15795 | 1265 |
<I/σ(I)> | 8.8 | |
Completeness [%] | 99.9 | |
Redundancy | 4.2 | |
CC(1/2) | 0.995 | 0.633 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 0.2 M Ammonium phosphate dibasic, 17% w/v PEG3350, pH 8.0, with a protein concentration of 14 mg/ml |