7JQ2
Structure of the SARS-CoV-2 main protease in complex with inhibitor MPI5
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 120 |
Detector technology | PIXEL |
Collection date | 2020-07-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 45.320, 53.300, 114.590 |
Unit cell angles | 90.00, 100.97, 90.00 |
Refinement procedure
Resolution | 38.920 - 1.400 |
R-factor | 0.1604 |
Rwork | 0.158 |
R-free | 0.21390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6y2e |
RMSD bond length | 0.008 |
RMSD bond angle | 1.220 |
Data reduction software | iMOSFLM |
Data scaling software | pointless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 56.250 | 1.420 |
High resolution limit [Å] | 1.400 | 1.400 |
Number of reflections | 51140 | 2451 |
<I/σ(I)> | 10.7 | |
Completeness [%] | 97.0 | |
Redundancy | 4 | |
CC(1/2) | 0.998 | 0.303 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 0.2 M Ammonium phosphate dibasic, 17% w/v PEG3350, pH 8.0, with a protein concentration of 14 mg/ml |