7JP2
Crystal structure of TP0037 from Treponema pallidum, a D-lactate dehydrogenase
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 19-ID |
| Synchrotron site | APS |
| Beamline | 19-ID |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2016-10-12 |
| Detector | DECTRIS PILATUS3 X 1M |
| Wavelength(s) | 0.97914 |
| Spacegroup name | P 21 21 21 |
| Unit cell lengths | 72.660, 94.687, 101.455 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 38.082 - 1.380 |
| R-factor | 0.1369 |
| Rwork | 0.136 |
| R-free | 0.15800 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 1xdw |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.901 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 50.000 | 50.000 | 1.400 |
| High resolution limit [Å] | 1.380 | 3.750 | 1.380 |
| Rmerge | 0.047 | 0.029 | 0.296 |
| Rmeas | 0.054 | 0.033 | 0.337 |
| Rpim | 0.025 | 0.016 | 0.157 |
| Total number of observations | 618853 | ||
| Number of reflections | 143109 | 7558 | 7071 |
| <I/σ(I)> | 6.8 | ||
| Completeness [%] | 99.5 | 99.1 | 98.8 |
| Redundancy | 4.3 | 4.3 | 4.3 |
| CC(1/2) | 0.998 | 0.923 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | 200 mM sodium-potassium phosphate, 100 mM Bis-Tris propane pH 7.5, 20% (w/v) PEG3350 |
