7JHM
Structure of human beta 1,3-N-acetylglucosaminyltransferase 2 with N-acetyl-lactosamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.2 |
Synchrotron site | ALS |
Beamline | 5.0.2 |
Temperature [K] | 87 |
Detector technology | PIXEL |
Collection date | 2017-10-06 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.00 |
Spacegroup name | I 1 2 1 |
Unit cell lengths | 82.509, 76.992, 134.389 |
Unit cell angles | 90.00, 105.06, 90.00 |
Refinement procedure
Resolution | 46.464 - 2.190 |
R-factor | 0.1904 |
Rwork | 0.189 |
R-free | 0.21890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jhi |
RMSD bond length | 0.004 |
RMSD bond angle | 0.782 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.29) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.464 | 46.460 | 2.260 |
High resolution limit [Å] | 2.190 | 9.030 | 2.190 |
Rmerge | 0.110 | 0.030 | 0.979 |
Rmeas | 0.120 | 0.032 | 1.056 |
Rpim | 0.046 | 0.013 | 0.394 |
Total number of observations | 4156 | 25499 | |
Number of reflections | 41932 | 636 | 3627 |
<I/σ(I)> | 11.7 | 32.5 | 2.3 |
Completeness [%] | 99.9 | 99 | 99.9 |
Redundancy | 6.8 | 6.5 | 7 |
CC(1/2) | 0.999 | 0.999 | 0.812 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 24% PEG1500, 20% glycerol |