7FUP
Crystal Structure of human cyclic GMP-AMP synthase in complex with methyl 1-benzoyl-3-methyl-5-(1,2-oxazol-5-yl)pyrazole-4-carboxylate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-10 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 1.00006 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 102.353, 102.353, 242.377 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.073 - 2.411 |
R-factor | 0.1809 |
Rwork | 0.178 |
R-free | 0.22670 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | inhouse model |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.16rc1_3531) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 83.250 | 50.073 | 2.470 |
High resolution limit [Å] | 2.410 | 10.780 | 2.410 |
Rmerge | 0.205 | 0.029 | 9.900 |
Rmeas | 0.211 | 0.030 | 10.444 |
Total number of observations | 574971 | ||
Number of reflections | 29746 | 442 | 2064 |
<I/σ(I)> | 12.87 | 64.42 | 0.16 |
Completeness [%] | 99.3 | 99.3 | 95.9 |
Redundancy | 19.329 | 13.826 | 17.628 |
CC(1/2) | 0.999 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 10-12 mg/mL protein in 25 mM Tris/HCl pH7.5, 500mM NaCl, 2mM TCEP, supplemented with 10x molar excess of ligand and, if needed, with 10 mM MgCl2 and 5mM ATP, then mixed 1:1 with reservoir of the Procomplex screen. Several conditions resulted in crystals. |