7FSB
Structure of liver pyruvate kinase in complex with allosteric modulator 41
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-11 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 208.049, 113.231, 188.473 |
Unit cell angles | 90.00, 91.84, 90.00 |
Refinement procedure
Resolution | 188.380 - 2.495 |
R-factor | 0.2679 |
Rwork | 0.267 |
R-free | 0.29180 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.920 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4 (16-JUL-2021)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 103.971 | 103.971 | 2.724 |
High resolution limit [Å] | 2.495 | 7.654 | 2.495 |
Rmerge | 0.086 | 0.034 | 1.183 |
Rpim | 0.035 | 0.014 | 0.484 |
Total number of observations | 759423 | ||
Number of reflections | 108408 | 5419 | 5421 |
<I/σ(I)> | 9.7 | 26.4 | 1.5 |
Completeness [%] | 94.3 | ||
Redundancy | 7 | 7 | 6.9 |
CC(1/2) | 0.999 | 0.999 | 0.744 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 100 mM HEPES/MOPS, 10% PEG8000, 20% ethylene glycol, 10 mM phenylalanine, 20 mM sodium oxalate |