7F79
Crystal structure of glutamate dehydrogenase 3 from Candida albicans in complex with alpha-ketoglutarate and NADPH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NFPSS BEAMLINE BL19U1 |
Synchrotron site | NFPSS |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-31 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 96.279, 155.224, 98.807 |
Unit cell angles | 90.00, 95.50, 90.00 |
Refinement procedure
Resolution | 44.800 - 2.700 |
R-factor | 0.2013 |
Rwork | 0.199 |
R-free | 0.24720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5xvx |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MoRDa |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.800 |
High resolution limit [Å] | 2.700 | 5.810 | 2.700 |
Rmerge | 0.156 | 0.054 | 0.984 |
Rmeas | 0.185 | 0.064 | 1.167 |
Rpim | 0.098 | 0.034 | 0.620 |
Total number of observations | 274007 | ||
Number of reflections | 79980 | 8088 | 7950 |
<I/σ(I)> | 3.8 | ||
Completeness [%] | 98.5 | 98 | 98.7 |
Redundancy | 3.4 | 3.5 | 3.4 |
CC(1/2) | 0.985 | 0.528 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 289 | 0.2 M DL-Malic acid, pH 7.0, and 20% PEG 3350 |