7EKH
Structure of SARS-CoV-2 spike receptor-binding domain Y453F mutation complexed with human ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-26 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 103.639, 103.639, 227.133 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.390 - 2.400 |
R-factor | 0.2107 |
Rwork | 0.210 |
R-free | 0.22800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lzg |
RMSD bond length | 0.005 |
RMSD bond angle | 0.742 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Number of reflections | 49236 | 46716 |
<I/σ(I)> | 19.826 | |
Completeness [%] | 99.8 | |
Redundancy | 18.7 | |
CC(1/2) | 0.998 | 0.565 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 291 | 0.1 M MES, pH 6.5, 10% w/v PEG 5000 MME, 12% v/v1-Propanol |