7EBC
Crystal structure of Isocitrate lyase-1 from Saccaromyces cervisiae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL44XU |
Synchrotron site | SPring-8 |
Beamline | BL44XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 95.522, 129.377, 210.787 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.800 - 2.300 |
R-factor | 0.19046 |
Rwork | 0.189 |
R-free | 0.21974 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5e9g |
RMSD bond length | 0.004 |
RMSD bond angle | 0.640 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.900 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 116065 | 11263 |
<I/σ(I)> | 13.8 | |
Completeness [%] | 99.7 | |
Redundancy | 6.9 | |
CC(1/2) | 0.997 | 0.788 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 40mM Na-HEPES pH7.0, 8%(w/v)PEG 3350 |