7E5O

Crystal structure of SARS-CoV-2 RBD in complex with antibody NT-193

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PHOTON FACTORY BEAMLINE BL-17A
Synchrotron site	Photon Factory
Beamline	BL-17A
Temperature [K]	100
Detector technology	PIXEL
Collection date	2020-12-21
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.98
Spacegroup name	P 21 21 21
Unit cell lengths	84.073, 106.886, 148.074
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	45.100 - 2.800
R-factor	0.2277
Rwork	0.226
R-free	0.25620
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	7jmp
RMSD bond length	0.007
RMSD bond angle	0.982
Data reduction software	XDS
Data scaling software	Aimless
Refinement software	PHENIX (1.18_3845)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	45.100	2.900
High resolution limit [Å]	2.800	2.800
Rmerge	0.205
Rmeas	0.223
Rpim	0.085
Number of reflections	33546	3306
<I/σ(I)>	5.75
Completeness [%]	99.9
Redundancy	6.8
CC(1/2)	0.969	0.704

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1 M HEPES pH 7.5, 10% (w/v) PEG 8000, 8% (w/v) Ethylene glycol