7E5H
HUMAN PPAR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH APHM6 OBTAINED BY COCRYSTALLIZATION
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL26B1 |
Synchrotron site | SPring-8 |
Beamline | BL26B1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-29 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.599, 61.923, 53.148 |
Unit cell angles | 90.00, 106.54, 90.00 |
Refinement procedure
Resolution | 42.750 - 1.660 |
R-factor | 0.2046 |
Rwork | 0.203 |
R-free | 0.23900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2znn |
RMSD bond length | 0.013 |
RMSD bond angle | 1.298 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.690 |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.027 | 0.306 |
Rmeas | 0.037 | 0.425 |
Rpim | 0.025 | 0.294 |
Number of reflections | 60636 | 1569 |
<I/σ(I)> | 19.6 | 3.4 |
Completeness [%] | 99.2 | 97.8 |
Redundancy | 3.3 | 3.2 |
CC(1/2) | 0.999 | 0.894 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.1 M Bis-Tris, 25% (w/v) polyethylene glycol (PEG) 3350 |