7E4Q
Crystal structure of tubulin in complex with L-DM1-SMe
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97908 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.893, 157.209, 181.658 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.878 - 2.501 |
R-factor | 0.2059 |
Rwork | 0.205 |
R-free | 0.25210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tv8 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.696 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.500 | 6.780 | 2.500 |
Rmerge | 0.062 | 0.030 | 0.623 |
Rmeas | 0.068 | 0.033 | 0.727 |
Rpim | 0.028 | 0.012 | 0.362 |
Total number of observations | 538867 | ||
Number of reflections | 101948 | 5495 | 4724 |
<I/σ(I)> | 12.7 | ||
Completeness [%] | 97.8 | 98.8 | 92 |
Redundancy | 5.3 | 7 | 3.5 |
CC(1/2) | 0.999 | 0.755 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.7 | 293 | 6% poly(ethylene glycol) 4000, 8% glycerol, 0.1 M MES (pH 6.7), 30 mM CaCl2, 30 mM MgCl2 |