7E17
Structure of dimeric uPAR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-05-03 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 79.580, 79.580, 270.530 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 56.270 - 2.960 |
R-factor | 0.2505 |
Rwork | 0.248 |
R-free | 0.29930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fd6 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 56.270 | 56.270 | 3.040 |
High resolution limit [Å] | 2.960 | 13.240 | 2.960 |
Rmerge | 0.175 | 0.042 | 1.312 |
Rmeas | 0.191 | 0.048 | 1.417 |
Number of reflections | 37874 | 266 | 1347 |
<I/σ(I)> | 10.25 | 21.83 | 2.05 |
Completeness [%] | 99.1 | 91.4 | 99.9 |
Redundancy | 6.74 | 5.128 | 7.272 |
CC(1/2) | 0.994 | 0.996 | 0.628 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 295 | 1.8-2.2 M ammonium sulphate in 50 mM sodium acetate at pH 4.5oC5.2 |