7DB0
Crystal structure of Drosophila melanogaster Noppera-bo, glutathione S-transferase epsilon 14 (DmGSTE14), in dimedone-bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-5A |
Synchrotron site | Photon Factory |
Beamline | BL-5A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-14 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 57.253, 74.747, 109.952 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.390 - 1.660 |
R-factor | 0.1736 |
Rwork | 0.172 |
R-free | 0.20100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6kem |
RMSD bond length | 0.005 |
RMSD bond angle | 0.717 |
Data reduction software | XDS (Jun 17, 2015) |
Data scaling software | Aimless (0.5.15) |
Phasing software | MOLREP (11.7.02) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.390 | 1.719 |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.114 | 0.732 |
Rmeas | 0.128 | 0.820 |
Rpim | 0.057 | 0.366 |
Number of reflections | 56430 | 5570 |
<I/σ(I)> | 11.6 | 2.2 |
Completeness [%] | 99.9 | 99.95 |
Redundancy | 4.9 | 4.9 |
CC(1/2) | 0.997 | 0.721 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.4 | 293 | 34% (v/v) PPG400 in 80mM Bis-Tris, pH 6.4 |