7D5E
Left-handed G-quadruplex containing two bulges
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 29.100, 39.810, 54.970 |
Unit cell angles | 90.00, 91.28, 90.00 |
Refinement procedure
Resolution | 29.093 - 1.296 |
R-factor | 0.1853 |
Rwork | 0.184 |
R-free | 0.21410 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4u5m |
RMSD bond length | 0.007 |
RMSD bond angle | 1.038 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.093 | 1.342 |
High resolution limit [Å] | 1.296 | 1.296 |
Rmerge | 0.164 | 1.203 |
Rmeas | 0.180 | 1.345 |
Rpim | 0.073 | 0.589 |
Number of reflections | 31051 | 2861 |
<I/σ(I)> | 6.86 | |
Completeness [%] | 94.7 | 90.68 |
Redundancy | 6 | |
CC(1/2) | 0.996 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 297 | 0.08 M potassium chloride, 0.04 M sodium cacodylate trihydrate pH 7.0, 60% v/v -2-methyl-2,4-pentanediol and 0.012 M spermine tetrahydrochloride |