7D3D
Crystal structure of SPOP bound with a peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9735 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.196, 58.555, 94.180 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.000 - 1.450 |
R-factor | 0.1639 |
Rwork | 0.163 |
R-free | 0.18900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ivv |
RMSD bond length | 0.009 |
RMSD bond angle | 1.404 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.730 | 30.000 | 1.500 |
High resolution limit [Å] | 1.440 | 3.120 | 1.450 |
Rmerge | 0.073 | 0.053 | 0.474 |
Rmeas | 0.076 | 0.056 | 0.512 |
Rpim | 0.021 | 0.016 | 0.189 |
Number of reflections | 50483 | 5440 | 4277 |
<I/σ(I)> | 8.4 | ||
Completeness [%] | 98.1 | 100 | 84.4 |
Redundancy | 11.9 | 12.6 | 6.9 |
CC(1/2) | 0.999 | 0.897 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 200 mM sodium acetate trihydrate, pH 7.0, 20%(w/v) polyethylene glycol 3350 |