7CXF
The ligand-free structure of human PPARgamma LBD C285Y mutant in the presence of the SRC-1 coactivator peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-11-14 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97940 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 130.730, 51.936, 54.133 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.313 - 2.350 |
Rwork | 0.229 |
R-free | 0.26930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5gtp |
RMSD bond length | 0.004 |
RMSD bond angle | 1.269 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.390 |
High resolution limit [Å] | 2.350 | 2.350 |
Rmerge | 0.053 | 0.584 |
Number of reflections | 16225 | 778 |
<I/σ(I)> | 28.21 | 2.64 |
Completeness [%] | 99.0 | 97.9 |
Redundancy | 5.7 | 5.8 |
CC(1/2) | 1.000 | 0.874 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 295 | 2.2 M sodium malonate (pH 7.0) |