7CNM
YDX in complex with tubulin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9785 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.127, 155.022, 186.278 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 119.160 - 2.440 |
R-factor | 0.2026 |
Rwork | 0.201 |
R-free | 0.23680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i55 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | REFMAC (3.5) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 119.160 | 50.000 | 2.540 |
High resolution limit [Å] | 2.440 | 5.280 | 2.450 |
Rmerge | 0.075 | 0.026 | 0.754 |
Rmeas | 0.082 | 0.028 | 0.820 |
Rpim | 0.032 | 0.011 | 0.319 |
Number of reflections | 113201 | 11806 | 11169 |
<I/σ(I)> | 6.5 | ||
Completeness [%] | 100.0 | 99.8 | 100 |
Redundancy | 6.4 | 6.2 | 6.5 |
CC(1/2) | 0.999 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.7 | 277 | 6% PEG, 5% glycerol, 0.1 M MES, 30 mM CaCl2, 30 mM MgCl2, pH 6.7 |