7CD3
Crystal structure of the S103F mutant of Bacillus subtilis (natto) YabJ protein.
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | PHOTON FACTORY BEAMLINE AR-NW12A |
| Synchrotron site | Photon Factory |
| Beamline | AR-NW12A |
| Temperature [K] | 95 |
| Detector technology | CCD |
| Collection date | 2015-11-19 |
| Detector | ADSC QUANTUM 270 |
| Wavelength(s) | 1.0000 |
| Spacegroup name | I 2 2 2 |
| Unit cell lengths | 97.896, 108.598, 118.474 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 80.050 - 2.100 |
| R-factor | 0.19753 |
| Rwork | 0.194 |
| R-free | 0.25321 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5y6u |
| RMSD bond length | 0.012 |
| RMSD bond angle | 1.578 |
| Data reduction software | HKL-2000 |
| Data scaling software | SCALEPACK |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 100.000 | 2.160 |
| High resolution limit [Å] | 2.100 | 2.100 |
| Rmerge | 0.114 | 0.608 |
| Rpim | 0.038 | 0.225 |
| Number of reflections | 37727 | 3711 |
| <I/σ(I)> | 12.4 | 2.7 |
| Completeness [%] | 99.7 | 99.9 |
| Redundancy | 9.3 | 8 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 3.5 | 293 | 1.8 M ammonium sulfate, 1 mM zinc acetate, 0.1 M citric acid buffer pH 3.5 |
