7C69
Crystal structure of beta-glycosides-binding protein of ABC transporter in a closed state bound to sophorose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-04-19 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 62.790, 108.930, 109.990 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.060 - 2.350 |
R-factor | 0.203 |
Rwork | 0.200 |
R-free | 0.26230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c63 |
RMSD bond length | 0.011 |
RMSD bond angle | 1.764 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.790 | 62.790 | 2.430 |
High resolution limit [Å] | 2.350 | 9.100 | 2.350 |
Rmerge | 0.202 | 0.136 | 0.508 |
Rmeas | 0.214 | 0.145 | 0.543 |
Rpim | 0.071 | 0.051 | 0.188 |
Total number of observations | 279970 | 4845 | 25078 |
Number of reflections | 32179 | 640 | 3110 |
<I/σ(I)> | 9.6 | 14.8 | 3.8 |
Completeness [%] | 99.9 | 99.9 | 99.7 |
Redundancy | 8.7 | 7.6 | 8.1 |
CC(1/2) | 0.984 | 0.983 | 0.901 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M Ammonium sulphate, 35% PEG 8000 |