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7C69

Crystal structure of beta-glycosides-binding protein of ABC transporter in a closed state bound to sophorose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2019-04-19
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths62.790, 108.930, 109.990
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution55.060 - 2.350
R-factor0.203
Rwork0.200
R-free0.26230
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7c63
RMSD bond length0.011
RMSD bond angle1.764
Data reduction softwareMOSFLM (7.2.2)
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER (2.8.3)
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]62.79062.7902.430
High resolution limit [Å]2.3509.1002.350
Rmerge0.2020.1360.508
Rmeas0.2140.1450.543
Rpim0.0710.0510.188
Total number of observations279970484525078
Number of reflections321796403110
<I/σ(I)>9.614.83.8
Completeness [%]99.999.999.7
Redundancy8.77.68.1
CC(1/2)0.9840.9830.901
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2 M Ammonium sulphate, 35% PEG 8000

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PDB entries from 2024-06-12

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