7AQG
Crystal Structure of Small Molecule Inhibitor TM5484 Bound to Stabilized Active Plasminogen Activator Inhibitor-1 (PAI-1-W175F)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-10-01 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.991870 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.511, 71.482, 96.210 |
Unit cell angles | 90.00, 101.33, 90.00 |
Refinement procedure
Resolution | 43.800 - 2.270 |
R-factor | 0.2187 |
Rwork | 0.215 |
R-free | 0.26770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6gwn |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 94.340 | 94.340 | 2.250 |
High resolution limit [Å] | 2.130 | 6.740 | 2.130 |
Rmerge | 0.077 | 0.041 | 0.875 |
Rmeas | 0.090 | 0.048 | 1.015 |
Rpim | 0.046 | 0.025 | 0.508 |
Total number of observations | 124847 | 3816 | 18916 |
Number of reflections | 33767 | 1113 | 4910 |
<I/σ(I)> | 8.1 | 20.4 | 1.4 |
Completeness [%] | 99.6 | 99 | 99.8 |
Redundancy | 3.7 | 3.4 | 3.9 |
CC(1/2) | 0.997 | 0.997 | 0.771 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 277 | 0.1 M BIS-TRIS, 10% w/v PEG 3350 |