7ADU
Crystal structure of the Prototype Foamy Virus (PFV) intasome in complex with magnesium and the INSTI XZ440 (compound 5j)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-03 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97957 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 159.469, 159.469, 123.499 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 71.320 - 2.620 |
R-factor | 0.2036 |
Rwork | 0.202 |
R-free | 0.23150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4bdz |
RMSD bond length | 0.002 |
RMSD bond angle | 0.521 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_3900) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 97.640 | 2.660 |
High resolution limit [Å] | 2.620 | 2.620 |
Rmerge | 0.167 | 2.200 |
Rpim | 0.064 | 0.857 |
Number of reflections | 48059 | 33332 |
<I/σ(I)> | 11.1 | 1.1 |
Completeness [%] | 99.4 | |
Redundancy | 14 | 14.5 |
CC(1/2) | 0.990 | 0.722 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 291 | 1.35 M ammonium sulfate, 25% (v/v) glycerol, 4.8% (v/v) 1,6-hexanediol, 50 mM Mes-NaOH, 1mM EDTA, pH 6.5 |