7ZF3
SARS-CoV-2 Omicron RBD in complex with Omi-3 and EY6A Fabs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-01-31 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9762 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.517, 119.889, 134.019 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 73.280 - 3.150 |
R-factor | 0.2104 |
Rwork | 0.208 |
R-free | 0.26610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7qnw |
RMSD bond length | 0.002 |
RMSD bond angle | 0.499 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 74.000 | 3.200 |
High resolution limit [Å] | 3.150 | 3.150 |
Rmerge | 0.491 | |
Rpim | 0.136 | |
Number of reflections | 252075 | 1209 |
<I/σ(I)> | 5 | 0.6 |
Completeness [%] | 100.0 | 99.2 |
Redundancy | 13.7 | |
CC(1/2) | 0.955 | 0.330 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M sodium citrate tribasic dihydrate pH 5.0, 30% (v/v) Jeffamine ED-2001 pH 7.0 |