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7Z97

Crystal structure of the F191M variant of Variovorax paradoxus indole monooxygenase (VpIndA1) in complex with 6-bromoindole

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-21
DetectorDECTRIS EIGER2 S 16M
Wavelength(s)0.97933
Spacegroup nameP 32 2 1
Unit cell lengths95.863, 95.863, 111.522
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution83.020 - 1.460
R-factor0.172
Rwork0.170
R-free0.20760
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)7z4x
Data reduction softwareXDS
Data scaling softwareAimless (0.7.3)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]83.02083.0201.490
High resolution limit [Å]1.4608.0101.460
Rmerge0.0480.0441.679
Rmeas0.0510.0492.161
Rpim0.0180.0211.335
Total number of observations72661537975517
Number of reflections999726862835
<I/σ(I)>12.839.60.3
Completeness [%]97.696.956.1
Redundancy7.35.51.9
CC(1/2)0.9990.9950.415
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5293100 mM Na-acetate pH 5, 1400 mM Na-malonate, 1 mM DTT, 3 mM FAD, 1 mM 6-bromoindole, cryo: 15 % (v/v) ethylene glycol

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PDB entries from 2024-05-15

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