7Z36
Crystal structure of the KAP1 tripartite motif in complex with the ZNF93 KRAB domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-21 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9795 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 190.283, 68.583, 149.111 |
Unit cell angles | 90.00, 114.05, 90.00 |
Refinement procedure
Resolution | 63.790 - 2.800 |
R-factor | 0.2291 |
Rwork | 0.227 |
R-free | 0.27400 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6qaj |
RMSD bond length | 0.013 |
RMSD bond angle | 1.551 |
Data reduction software | xia2 (3.4.dev) |
Data scaling software | DIALS (3.dev.431-gf865f6176) |
Phasing software | PHASER (1.20.1_4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.790 | 2.900 |
High resolution limit [Å] | 2.800 | 2.800 |
Rmerge | 0.075 | 0.503 |
Rpim | 0.052 | 0.343 |
Number of reflections | 42537 | 4206 |
<I/σ(I)> | 20.87 | 2.86 |
Completeness [%] | 97.3 | 97.29 |
Redundancy | 2.8 | 2.9 |
CC(1/2) | 0.985 | 0.702 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | 11% (w/v) PEG 5000 MME 5% Tacsimate 0.1 M HEPES pH 7 |