7XI3
Crystal Structure of the NPAS4-ARNT2 heterodimer in complex with DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL10U2 |
Synchrotron site | SSRF |
Beamline | BL10U2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-07-18 |
Detector | SIEMENS-NICOLET |
Wavelength(s) | 0.979183 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 72.773, 72.773, 415.269 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 15.969 - 4.274 |
R-factor | 0.2523 |
Rwork | 0.249 |
R-free | 0.31460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zpk |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 4.370 |
High resolution limit [Å] | 4.274 | 11.630 | 4.300 |
Rmerge | 0.181 | 0.054 | 0.679 |
Rmeas | 0.192 | 0.059 | 0.737 |
Rpim | 0.062 | 0.024 | 0.277 |
Number of reflections | 8463 | 516 | 380 |
<I/σ(I)> | 4.1 | ||
Completeness [%] | 99.0 | 97.5 | 95 |
Redundancy | 9.3 | 6.7 | 5.9 |
CC(1/2) | 0.994 | 0.823 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 8 | 289 | sodium citrate tribasic, PEG3350 |