7VDP
The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 1
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 21-ID-D |
| Synchrotron site | APS |
| Beamline | 21-ID-D |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-08-08 |
| Detector | DECTRIS EIGER X 9M |
| Wavelength(s) | 1.07809 |
| Spacegroup name | P 32 2 1 |
| Unit cell lengths | 118.370, 118.370, 155.370 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 51.790 - 2.090 |
| R-factor | 0.2022 |
| Rwork | 0.201 |
| R-free | 0.22870 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3o0g |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.356 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.2) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 51.790 | 51.790 | 2.140 |
| High resolution limit [Å] | 2.090 | 9.350 | 2.090 |
| Rmerge | 0.078 | 0.028 | 1.423 |
| Rmeas | 0.081 | 0.028 | 1.464 |
| Rpim | 0.018 | 0.006 | 0.339 |
| Total number of observations | 1501558 | 17017 | 101448 |
| Number of reflections | 74979 | 947 | 5525 |
| <I/σ(I)> | 24.9 | 75.8 | 2.4 |
| Completeness [%] | 100.0 | 99.4 | 100 |
| Redundancy | 20 | 18 | 18.4 |
| CC(1/2) | 1.000 | 1.000 | 0.782 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 0.1M MES pH 5.5, 0.3M MgCl2, 20% PEG3350 |
