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7VDP

The structure of cyclin-dependent kinase 5 (CDK5) in complex with p25 and Compound 1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, BCyclin-dependent-like kinase 5polymer29233306.32UniProt (Q00535)
Pfam (PF00069)
In PDB
Homo sapiens (Human)Cell division protein kinase 5
2C, DCyclin-dependent kinase 5 activator 1, p25polymer20923331.92UniProt (Q15078)
Pfam (PF03261)
In PDB
Homo sapiens (Human)
3A, B[1-[3-fluoranyl-4-[(2-piperidin-4-yloxy-1,6-naphthyridin-7-yl)amino]phenyl]pyrazol-3-yl]methanolnon-polymer434.52Chemie (65L)
4A, C1,2-ETHANEDIOLnon-polymer62.110Chemie (EDO)
5ADI(HYDROXYETHYL)ETHERnon-polymer106.12Chemie (PEG)
6A, CCHLORIDE IONnon-polymer35.57Chemie (CL)
7AGLYCEROLnon-polymer92.11Chemie (GOL)
8waterwater18.0372Chemie (HOH)
Sequence modifications
A, B: 2 - 292 (UniProt: Q00535)
PDBExternal DatabaseDetails
Ser 1-expression tag
C, D: 100 - 307 (UniProt: Q15078)
PDBExternal DatabaseDetails
Met 99-initiating methionine
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight113276.4
Non-Polymers*Number of molecules22
Total formula weight2042.1
All*Total formula weight115318.6
*Water molecules are not included.

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PDB entries from 2024-06-26

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