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7U4R

Structure of MAP kinase phosphatase 5 in complex with 3,3-dimethyl-1-((9-propyl-5,6-dihydrothieno[2,3-h]quinazolin-2-yl)thio)butan-2-one, an allosteric inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2018-02-09
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9798
Spacegroup nameP 1 21 1
Unit cell lengths65.376, 129.505, 83.654
Unit cell angles90.00, 91.82, 90.00
Refinement procedure
Resolution48.490 - 3.140
R-factor0.1774
Rwork0.172
R-free0.22470
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6mc1
RMSD bond length0.003
RMSD bond angle0.524
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.4903.252
High resolution limit [Å]3.1403.140
Rmerge0.0590.526
Rmeas0.0820.735
Number of reflections243643500
<I/σ(I)>9.071.62
Completeness [%]84.786.03
Redundancy1.71.7
CC(1/2)0.9960.586
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5277100 mM bis-Tris, pH 5.5, 200 mM ammonium acetate, 5% w/v PEG3350

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PDB entries from 2025-12-10

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