7TBC
Crystal structure of Plasmepsin X from Plasmodium falciparum in complex with WM382
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-10-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95373 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 109.320, 109.320, 118.310 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.620 - 2.760 |
R-factor | 0.1982 |
Rwork | 0.197 |
R-free | 0.22800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7tbb |
RMSD bond length | 0.003 |
RMSD bond angle | 0.561 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.630 | 2.910 |
High resolution limit [Å] | 2.760 | 2.760 |
Rpim | 0.030 | 0.496 |
Number of reflections | 21289 | 2860 |
<I/σ(I)> | 12.5 | |
Completeness [%] | 99.0 | 93.6 |
Redundancy | 22.6 | 6.5 |
CC(1/2) | 0.999 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 12.5% (v/v) 2-methyl-2,4-pentanediol, 0.1M bicine-tris pH 8.5, 2.85% (v/v) diethylene glycol, 6.35% (v/v) pentaethylene glycol, 12.5% (w/v) polyethylene glycol 1000, 12.5% (w/v) polyethylene glycol 3350, 5.2% (v/v) tetraethylene glycol, 4.1% (v/v) triethylene glycol |