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7SPL

[2T3] Self-assembling 3D DNA triangle with three inter-junction base pairs containing the L1 junction and a zero-linked center strand

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 17-ID
Synchrotron siteAPS
Beamline17-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-02-21
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.00743
Spacegroup nameH 3
Unit cell lengths87.841, 87.841, 140.534
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution36.720 - 6.090
R-factor0.236
Rwork0.234
R-free0.33480
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3gbi
RMSD bond length0.006
RMSD bond angle1.301
Data reduction softwareautoPROC
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]66.90066.9007.264
High resolution limit [Å]6.03310.6156.033
Number of reflections765192191
<I/σ(I)>4.4
Completeness [%]83.210055.2
Redundancy9.9
CC(1/2)0.9950.9950.039
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.8277100 mM MOPS, 1.25 M magnesium sulfate

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PDB entries from 2024-05-15

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