7Q5X

HIF PROLYL HYDROXYLASE 2 (PHD2/EGLN1) IN COMPLEX WITH 2-OXOGLUTARATE (2OG) AND HIF-2 ALPHA CODD (523-542)

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	DIAMOND BEAMLINE I24
Synchrotron site	Diamond
Beamline	I24
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-07-07
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.97962
Spacegroup name	P 21 21 2
Unit cell lengths	130.454, 38.175, 42.751
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	42.750 - 1.210
R-factor	0.158
Rwork	0.157
R-free	0.17590
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	3hqr
Data reduction software	xia2 (0.5.898)
Data scaling software	DIALS (1.14.8)
Phasing software	PHASER (2.8.2)
Refinement software	PHENIX (1.19.1)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	43.480	43.510	1.230
High resolution limit [Å]	1.210	3.280	1.210
Rmerge	0.132		4.204
Rmeas	0.138	0.061	4.898
Rpim	0.039	0.018	1.500
Number of reflections	66301	3617	3260
<I/σ(I)>	10	31.3	1
Completeness [%]	100.0	100	99.1
Redundancy	12.2	11.5	10.4
CC(1/2)	0.999		0.421

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	7.5	298	Sample: 1.0 mM PHD2, 1.2 mM MnCl2, 2.0 mM 2OG, 2 mM 3C, 2-4 mM HIF-2alpha-CODD; Reservoir: 0.33 M Magnesium formate (range: 0.25-0.39 M), 17.5% w/v polyethylene glycol 3350 (range: 18-22%); Sitting drop (200 nl): protein-to-well ratio, 1:1; Cryo-protectant: 15% v/v dilution of reservior solution with glycerol