7Q1H
Variant D312N of Orotidine 5'-monophosphate decarboxylase-domain of human UMPS in complex with the substrate OMP at 1.31 Angstrom resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.68880 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 77.360, 116.318, 62.091 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 34.660 - 1.310 |
R-factor | 0.1459 |
Rwork | 0.144 |
R-free | 0.17780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7ov0 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.650 | 34.650 | 1.320 |
High resolution limit [Å] | 1.310 | 10.000 | 1.310 |
Rmerge | 0.058 | 0.022 | 0.998 |
Rmeas | 0.066 | 0.026 | 1.126 |
Total number of observations | 300507 | ||
Number of reflections | 66485 | 161 | 1514 |
<I/σ(I)> | 14.59 | 56.6 | 1.66 |
Completeness [%] | 98.5 | 87.5 | 99.5 |
Redundancy | 4.52 | 3.354 | 4.585 |
CC(1/2) | 0.999 | 0.999 | 0.655 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 100 mM Tris/HCl pH 7.0, 1.7 - 1.9 M Ammonium sulfate, 10 mM Glutathion, 5% (w/v) Glycerol |