7PPG
CRYSTAL STRUCTURE OF NAMPT IN COMPLEX WITH COMPOUND 9
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-08-28 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.91841 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 82.956, 106.180, 121.340 |
| Unit cell angles | 90.00, 96.53, 90.00 |
Refinement procedure
| Resolution | 48.590 - 2.130 |
| R-factor | 0.2553 |
| Rwork | 0.253 |
| R-free | 0.30250 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2gvj |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.422 |
| Data reduction software | XDS (VERSION January 10, 2014) |
| Data scaling software | pointless (version 1.9.12) |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.590 | 2.260 |
| High resolution limit [Å] | 2.130 | 2.130 |
| Rmeas | 0.151 | 0.570 |
| Number of reflections | 114934 | 18131 |
| <I/σ(I)> | 6.89 | 2.2 |
| Completeness [%] | 98.0 | 96.1 |
| Redundancy | 2.67 | 2.7 |
| CC(1/2) | 0.994 | 0.854 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 7.6 | 293 | 1 microliter of protein mixed with 1 microliter of reservoir buffer (27-31% PEG 3350 (w/v), 200 mM NaCl, 100 mM sodium dihydrogen phosphate pH 7.6) incubated for 5 min, then streak seeded (with crystals obtained previously under identical conditions). Ligand added prior to crystallization (2 MILLIMOLAR FROM 100 MILLIMOLAR STOCK IN DMSO) and incubated for 1.5 h at 277 K. CRYO BUFFER consisted of RESERVOIR supplemented WITH 2 MILLIMOLAR INHIBITOR AND 15% ETHYLENGLYCOL |






