7OFE
Keap1 kelch domain bound to a small molecule inhibitor of the Keap1-Nrf2 protein-protein interaction
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979126 |
Spacegroup name | P 61 |
Unit cell lengths | 103.082, 103.082, 55.208 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.670 - 1.190 |
R-factor | 0.1312 |
Rwork | 0.130 |
R-free | 0.14980 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fnu |
RMSD bond length | 0.007 |
RMSD bond angle | 1.035 |
Data reduction software | XDS (v Mar 15, 2019) |
Data scaling software | XDS (v Mar 15, 2019) |
Phasing software | PHASER (1.13_2998) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.670 | 1.234 |
High resolution limit [Å] | 1.190 | 1.191 |
Rmerge | 0.060 | 0.707 |
Rmeas | 0.062 | 0.745 |
Rpim | 0.017 | 0.233 |
Number of reflections | 106493 | 10446 |
<I/σ(I)> | 23.41 | 3.81 |
Completeness [%] | 99.8 | 98.58 |
Redundancy | 13.4 | 10.3 |
CC(1/2) | 0.999 | 0.883 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293 | 0.5 M Ammonium sulfate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6 and 1.0 M Lithium sulfate monohydrate |