7NUT
Crystal structure of human AMDHD2 in complex with Zn and GlcN6P
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2019-06-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.261, 161.449, 86.621 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.707 - 1.898 |
R-factor | 0.1857 |
Rwork | 0.185 |
R-free | 0.21270 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vhl |
Data reduction software | XDS (Mar 15, 2019) |
Data scaling software | XDS (Mar 15, 2019) |
Phasing software | PHENIX (1.16_3549) |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.707 | 1.970 |
High resolution limit [Å] | 1.898 | 1.898 |
Number of reflections | 70760 | 6907 |
<I/σ(I)> | 11.46 | |
Completeness [%] | 99.7 | |
Redundancy | 6.1 | |
CC(1/2) | 0.999 | 0.494 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.1 M Bis tris propane pH 8.25, 0.25 M Sodium nitrate, 20 % PEG3350 |