7NPM
X-ray structure of the adduct formed upon reaction of oxaliplatin with human angiogenin
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 11.2C |
Synchrotron site | ELETTRA |
Beamline | 11.2C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.96 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 37.720, 85.890, 33.390 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.940 - 1.860 |
Rwork | 0.178 |
R-free | 0.25370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eop |
RMSD bond length | 0.010 |
RMSD bond angle | 1.628 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.945 | 1.890 |
High resolution limit [Å] | 1.860 | 1.860 |
Rmerge | 0.171 | 1.220 |
Rpim | 0.052 | 0.387 |
Number of reflections | 9691 | 475 |
<I/σ(I)> | 10.5 | 2.5 |
Completeness [%] | 99.9 | 100 |
Redundancy | 11.8 | 10.7 |
CC(1/2) | 0.995 | 0.803 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.1 | 298 | 10 % PEG6K, 20 mM sodium citrate pH 5.1, 0.2 M sodium/potassium tartrate |