7N8S
LINE-1 endonuclease domain complex with DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 93 |
Detector technology | IMAGE PLATE |
Collection date | 2019-11-19 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 91.613, 91.613, 229.822 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.740 - 2.790 |
R-factor | 0.2693 |
Rwork | 0.264 |
R-free | 0.32180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vyb |
RMSD bond length | 0.006 |
RMSD bond angle | 0.818 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.850 |
High resolution limit [Å] | 2.790 | 2.800 |
Rmerge | 0.139 | 1.565 |
Rmeas | 0.148 | 1.660 |
Rpim | 0.050 | 0.548 |
Number of reflections | 14939 | 728 |
<I/σ(I)> | 18.5 | 1.8 |
Completeness [%] | 100.0 | 100 |
Redundancy | 8.6 | 9 |
CC(1/2) | 0.998 | 0.675 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 4.5 | 298 | 0.2M NH4 CH3 CO2; 15% PEG 4000 |