Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7MP3

Grb7-SH2 domain in complex with bicyclic peptide B8

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX2
Synchrotron siteAustralian Synchrotron
BeamlineMX2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-11-15
DetectorDECTRIS EIGER2 X 16M
Wavelength(s)0.95373
Spacegroup nameP 1
Unit cell lengths42.156, 53.122, 54.809
Unit cell angles103.98, 102.00, 100.05
Refinement procedure
Resolution51.330 - 2.550
R-factor0.223
Rwork0.221
R-free0.26420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5eeq
RMSD bond length0.002
RMSD bond angle0.497
Data reduction softwareDIALS (2021)
Data scaling softwareAimless (0.7.4)
Phasing softwareMOLREP (13.07.2020)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]52.5002.640
High resolution limit [Å]2.5502.550
Rmerge0.1390.781
Rpim0.0860.434
Number of reflections140361408
<I/σ(I)>4.941.28
Completeness [%]98.297.6
Redundancy4.2
CC(1/2)0.9120.564
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2930.2M NaCl, 0.1M BIS TRIS pH 6.6, 16% PEG3350

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon