7MP3
Grb7-SH2 domain in complex with bicyclic peptide B8
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-15 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.95373 |
Spacegroup name | P 1 |
Unit cell lengths | 42.156, 53.122, 54.809 |
Unit cell angles | 103.98, 102.00, 100.05 |
Refinement procedure
Resolution | 51.330 - 2.550 |
R-factor | 0.223 |
Rwork | 0.221 |
R-free | 0.26420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5eeq |
RMSD bond length | 0.002 |
RMSD bond angle | 0.497 |
Data reduction software | DIALS (2021) |
Data scaling software | Aimless (0.7.4) |
Phasing software | MOLREP (13.07.2020) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.500 | 2.640 |
High resolution limit [Å] | 2.550 | 2.550 |
Rmerge | 0.139 | 0.781 |
Rpim | 0.086 | 0.434 |
Number of reflections | 14036 | 1408 |
<I/σ(I)> | 4.94 | 1.28 |
Completeness [%] | 98.2 | 97.6 |
Redundancy | 4.2 | |
CC(1/2) | 0.912 | 0.564 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2M NaCl, 0.1M BIS TRIS pH 6.6, 16% PEG3350 |