7MLQ
X-ray crystal structure of human BRD4(D1) in complex with 2-(4-{5-[6-(2,5-dibromophenoxy)pyridin-2-yl]-4-methyl-1H-1,2,3-triazol-1-yl}piperidin-1-yl)-N,N-dimethylethan-1-amine (compound 26)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-12-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.123, 44.019, 79.560 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.780 - 1.320 |
R-factor | 0.1412 |
Rwork | 0.140 |
R-free | 0.16240 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6wgx |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 79.560 | 79.560 | 1.340 |
High resolution limit [Å] | 1.320 | 6.990 | 1.320 |
Rmerge | 0.034 | 0.024 | 0.675 |
Rmeas | 0.038 | 0.028 | 0.783 |
Rpim | 0.018 | 0.013 | 0.390 |
Total number of observations | 966 | 6256 | |
Number of reflections | 60065 | 240 | 1637 |
<I/σ(I)> | 19.6 | 54.5 | 1.8 |
Completeness [%] | 98.7 | 89.7 | 99.6 |
Redundancy | 4.2 | 4 | 3.8 |
CC(1/2) | 0.999 | 0.999 | 0.638 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | NaI, pH 8.5, Bis-Tris propane, 20% (v/v) PEG 3350, ethylene glycol |