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7MLQ

X-ray crystal structure of human BRD4(D1) in complex with 2-(4-{5-[6-(2,5-dibromophenoxy)pyridin-2-yl]-4-methyl-1H-1,2,3-triazol-1-yl}piperidin-1-yl)-N,N-dimethylethan-1-amine (compound 26)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2020-12-03
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.979
Spacegroup nameP 21 21 21
Unit cell lengths37.123, 44.019, 79.560
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution39.780 - 1.320
R-factor0.1412
Rwork0.140
R-free0.16240
Structure solution methodFOURIER SYNTHESIS
Starting model (for MR)6wgx
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]79.56079.5601.340
High resolution limit [Å]1.3206.9901.320
Rmerge0.0340.0240.675
Rmeas0.0380.0280.783
Rpim0.0180.0130.390
Total number of observations9666256
Number of reflections600652401637
<I/σ(I)>19.654.51.8
Completeness [%]98.789.799.6
Redundancy4.243.8
CC(1/2)0.9990.9990.638
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP295NaI, pH 8.5, Bis-Tris propane, 20% (v/v) PEG 3350, ethylene glycol

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PDB entries from 2024-05-15

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