7M10
PHF2 PHD Domain Complexed with Peptide From N-terminus of VRK1
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 22-ID |
| Synchrotron site | APS |
| Beamline | 22-ID |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-03-06 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 1.00000 |
| Spacegroup name | I 2 2 2 |
| Unit cell lengths | 34.240, 63.717, 103.152 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 32.500 - 1.150 |
| R-factor | 0.157 |
| Rwork | 0.157 |
| R-free | 0.16480 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3kqi |
| RMSD bond length | 0.004 |
| RMSD bond angle | 0.785 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHENIX |
| Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 32.500 | 1.190 |
| High resolution limit [Å] | 1.150 | 1.150 |
| Rmerge | 0.106 | 0.579 |
| Rpim | 0.034 | 0.370 |
| Number of reflections | 33230 | 991 |
| <I/σ(I)> | 20.1 | 1.5 |
| Completeness [%] | 81.5 | 24.7 |
| Redundancy | 9.1 | 2.3 |
| CC(1/2) | 1.000 | 0.740 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 8.2 | 292 | 3.5M Sodium Formate,100mM TRIS pH 8.2 |






