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7LON

Ornithine Aminotransferase (OAT) cocrystallized with its inactivator - (1S,3S)-3-amino-4-(difluoromethylene)cyclohexene-1-carboxylic acid

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2019-03-25
DetectorDECTRIS EIGER2 X 9M
Wavelength(s)1.127
Spacegroup nameP 31 1 2
Unit cell lengths192.024, 192.024, 57.058
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.050 - 1.950
R-factor0.2452
Rwork0.243
R-free0.27840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1oat
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.0501.977
High resolution limit [Å]1.9431.943
Rmerge0.1741.599
Rpim0.0920.925
Number of reflections874264085
<I/σ(I)>4.2
Completeness [%]99.593
Redundancy8.57
CC(1/2)0.9970.745
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293The freshly prepared enzyme was buffer exchanged into 50 mM Tricine pH 7.8 and concentrated to a protein concentration of 6 mg/mL. For each hanging drop, 2 ul of protein solution was mixed with equal volume of well solution and 0.5 ul of 10 mM compound. The crystals with the best morphology and size grew in a final condition containing 12% PEG 6000, 200 mM NaCl, 10% glycerol, 50 mM Tricine pH 7.8.

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PDB entries from 2025-12-03

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